Defect Motion and Lattice Pinning Barrier in Josephson-Junction Ladders

We study motion of domain wall defects in a fully frustrated Josephson-unction ladder system, driven by small applied currents. For small system sizes, the energy barrier E_B to the defect motion is computed analytically via symmetry and topological considerations. More generally, we perform numerical simulations directly on the equations of motion, based on the resistively-shunted junction model, to study the dynamics of defects, varying the system size. Coherent motion of domain walls is observed for large system sizes. In the thermodynamical limit, we find E_B=0.1827 in units of the Josephson coupling energy.Comment: 7 pages, and to apear in Phys. Rev.

Statistical Analysis of the Metropolitan Seoul Subway System: Network Structure and Passenger Flows

The Metropolitan Seoul Subway system, consisting of 380 stations, provides the major transportation mode in the metropolitan Seoul area. Focusing on the network structure, we analyze statistical properties and topological consequences of the subway system. We further study the passenger flows on the system, and find that the flow weight distribution exhibits a power-law behavior. In addition, the degree distribution of the spanning tree of the flows also follows a power law.Comment: 10 pages, 4 figure

Critical currents for vortex defect motion in superconducting arrays

We study numerically the motion of vortices in two-dimensional arrays of resistively shunted Josephson junctions. An extra vortex is created in the ground states by introducing novel boundary conditions and made mobile by applying external currents. We then measure critical currents and the corresponding pinning energy barriers to vortex motion, which in the unfrustrated case agree well with previous theoretical and experimental findings. In the fully frustrated case our results also give good agreement with experimental ones, in sharp contrast with the existing theoretical prediction. A physical explanation is provided in relation with the vortex motion observed in simulations.Comment: To appear in Physical Review

Dynamic transition and Shapiro-step melting in a frustrated Josephson-junction array

We consider a two-dimensional fully frustrated Josephson-junction array driven by combined direct and alternating currents. Interplay between the mode locking phenomenon, manifested by giant Shapiro steps in the current-voltage characteristics, and the dynamic phase transition is investigated at finite temperatures. Melting of Shapiro steps due to thermal fluctuations is shown to be accompanied by the dynamic phase transition, the universality class of which is also discussed

Molecular cytogenetic mapping of Cucumis sativus and C. melo using highly repetitive DNA sequences

Chromosomes often serve as one of the most important molecular aspects of studying the evolution of species. Indeed, most of the crucial mutations that led to differentiation of species during the evolution have occurred at the chromosomal level. Furthermore, the analysis of pachytene chromosomes appears to be an invaluable tool for the study of evolution due to its effectiveness in chromosome identification and precise physical gene mapping. By applying fluorescence in situ hybridization of 45S rDNA and CsCent1 probes to cucumber pachytene chromosomes, here, we demonstrate that cucumber chromosomes 1 and 2 may have evolved from fusions of ancestral karyotype with chromosome number n= 12. This conclusion is further supported by the centromeric sequence similarity between cucumber and melon, which suggests that these sequences evolved from a common ancestor. It may be after or during speciation that these sequences were specifically amplified, after which they diverged and specific sequence variants were homogenized. Additionally, a structural change on the centromeric region of cucumber chromosome 4 was revealed by fiber-FISH using the mitochondrial-related repetitive sequences, BAC-E38 and CsCent1. These showed the former sequences being integrated into the latter in multiple regions. The data presented here are useful resources for comparative genomics and cytogenetics of Cucumis and, in particular, the ongoing genome sequencing project of cucumbe

Towards Real-Time Detection and Tracking of Spatio-Temporal Features: Blob-Filaments in Fusion Plasma

A novel algorithm and implementation of real-time identification and tracking of blob-filaments in fusion reactor data is presented. Similar spatio-temporal features are important in many other applications, for example, ignition kernels in combustion and tumor cells in a medical image. This work presents an approach for extracting these features by dividing the overall task into three steps: local identification of feature cells, grouping feature cells into extended feature, and tracking movement of feature through overlapping in space. Through our extensive work in parallelization, we demonstrate that this approach can effectively make use of a large number of compute nodes to detect and track blob-filaments in real time in fusion plasma. On a set of 30GB fusion simulation data, we observed linear speedup on 1024 processes and completed blob detection in less than three milliseconds using Edison, a Cray XC30 system at NERSC.Comment: 14 pages, 40 figure